Matrixplot - covid_portal_v2.zarr

Observations

Age

(30, 39]

(40, 49]

(50, 59]

(60, 69]

(70, 79]

(80, 89]

(90, 99]

Collection_Day

D12

D13

D28

Days_from_onset

full_clustering

initial_clustering

leiden

n_genes

Minimum

201.0

Maximum

7185.0

Mean

1332.7025

Median

1245.0

n_genes_by_counts

Minimum

201.0

Maximum

7185.0

Mean

1332.6994

Median

1245.0

Outcome

Death

Home

nan

unknown

pct_counts_mt

Minimum

0.0

Maximum

10.516300201416016

Mean

3.1666998863220215

Median

2.76200008392334

Resample

Initial

Resample

sample_id

Sex

Female

Male

Site

Cambridge

Ncl

Sanger

Smoker

Ex-smoker

Healthy

LPS

nan

Non-smoker

Not_known

Smoker

Status

Covid

Healthy

LPS

Non_covid

Status_on_day_collection

Status_on_day_collection_summary

Asymptomatic

Critical

Healthy

LPS_10hours

LPS_90mins

Mild

Moderate

Non_covid

Severe

Swab_result

Healthy

LPS

Negative

Positive

time_after_LPS

10h

90m

nan

total_counts

Minimum

281.0

Maximum

84768.0

Mean

3795.09765625

Median

3073.0

total_counts_mt

Minimum

0.0

Maximum

3945.0

Mean

114.21240234375

Median

81.0

Worst_Clinical_Status

Dataset

Home » covid_portal_v2.zarr

Age

Collection_Day

Days_from_onset

full_clustering

initial_clustering

leiden

n_genes

n_genes_by_counts

Outcome

pct_counts_mt

Resample

sample_id

Sex

Site

Smoker

Status

Status_on_day_collection

Status_on_day_collection_summary

Swab_result

time_after_LPS

total_counts

total_counts_mt

Worst_Clinical_Status

Heatmap of the mean expression values

Gene Expression

Search for genes

Genes implicated with diseases